Analysis Tools

Data Portal Integrations


Minerva is a suite of software tools for interpreting and interacting with complex images, organized around a guided analysis approach.

Explore HTAN Minerva stories


CellxGene is an interactive viewer for single-cell expression.


Explore single cell RNA Seq data in CellxGene

Analysis Pipelines


MCMICRO is a software pipeline for generating single cell data from multiple tissue imaging technologies.

Integrations Coming Soon


The cBioPortal for Cancer Genomics is an open-source software platform that enables interactive, exploratory analysis of large-scale cancer genomics data sets with a biologist-friendly interface

Luna Single Cell Viewer

Luna is a tool for publishing single cell data with highlighted observations and findings.