Minerva is a suite of software tools for interpreting and interacting with complex images, organized around a guided analysis approach.
CellxGene is an interactive viewer for single-cell expression.
The cBioPortal for Cancer Genomics is an open-source software platform that enables interactive, exploratory analysis of large-scale cancer genomics data sets with a biologist-friendly interface
Google BigQuery is a massively-parallel analytics engine ideal for working with tabular data. HTAN single cell and metadata BigQuery tables are available via the CRDC ISB Cancer Gateway in the Cloud
Explore HTAN BigQuery tables in ISB-CGC. Included are computational notebooks illustrating how to query and work with HTAN data. To explore HTAN BigQuery tables in ISB-CGC, select Launch under BigQuery Table Search and HTAN from the Program dropdown. To access HTAN R and Python notebooks, select GitHub under Notebooks and navigate to the HTAN folder.
MCMICRO is a software pipeline for generating single cell data from multiple tissue imaging technologies.